sexta-feira, 9 de maio de 2014

Higher-yielding crop plants? Plant hormone has dual role in triggering flower formation

 

 


Researchers have identified a pathway that promotes flower formation in Arabidopsis thaliana.

Flowers aren't just pretty to look at, they are how plants reproduce. In agricultural plants, the timing and regulation of flower formation has economic significance, affecting a crop's yield.

A new paper by researchers at the University of Pennsylvania published in the journal Science has revealed that a plant hormone once believed to promote flower formation in annual plants also plays a role in inhibiting flowers from forming. The dual role of this hormone, gibberellin, could be exploited to produce higher-yielding crop plants.

The study was led by Nobutoshi Yamaguchi and Doris Wagner of the School of Arts and Sciences' Department of Biology. Wagner is professor and graduate chair, and Yamaguchi is a postdoctoral researcher. Department co-authors included Cara M. Winter, Miin-Feng Wu and Ayako Yamaguchi. The Penn team collaborated with Yuri Kanno and Mitsunori Seo of RIKEN Center for Sustainable Resource Science in Japan.

Plant scientists used to think that short-lived plants, annuals or bi-annuals, use a different strategy from long-lived plants, perennials, to regulate flower production.

"Anecdotal evidence was that the hormone gibberellin promoted the switch to flower formation in short-lived plants, along with other cues such as temperature, season and photoperiod," Wagner said. "But in the long-lived plants, like in fruit trees, people have known that if you sprayed them with the hormone it inhibited flower production. So it was a big puzzle: why would the same hormone do one thing in short-lived plants and another in long-lived plants?"

To address this paradox, the Penn team began by looking for new genes important to the flower-forming process. Specifically, they performed a genome-wide search of the plant species Arabidopsis thaliana to find direct targets of the protein LEAFY, which is known to promote flower formation.

One gene that turned up was called ELA1, which produces a cytochrome enzyme and has been shown to play a role in breaking down gibberellin. Further experiments showed that in plants that lost ELA1 function, flowers formed much later than normal.

The researchers also found that plants that lacked LEAFY had high levels of gibberellin, and plants engineered to produce high levels of LEAFY had lower levels of the hormone and were also shorter with greater levels of chlorophyll -- characteristics of gibberellin deficiency.

"At first we were confused because gibberellin was supposed to promote all of this activity that leads to flower formation," Wagner said. "Then when we found a direct target of LEAFY that is linked to gibberellin catabolism, that gave us the clue that gibberellin must have a role in inhibiting flower formation as well."

Plants that were genetically modified to not produce gibberellin properly and plants that were treated with a gibberellin inhibitor showed signs of a delayed first transition to inflorescence but accelerated signs of flower formation. Spraying the plants with gibberellin had the opposite effect.

The results suggested that the two transition steps that lead plants to produce flowers might be regulated distinctly, both involving gibberellin. While gibberellin promotes the first transition, in which plants stop producing stems and leaves and produce an inflorescence, it inhibited the second stage, in which flowers were formed.

The mechanism, the Penn team showed, involves rising and then falling levels of gibberellin. High levels cause the plant to end the vegetative phase of development. At that point, LEAFY and ELA1 activity cause gibberellin to break down. Freed from the inhibitory effects of the hormone, a suite of proteins are activated that trigger flower formation.

"When it comes to determining the number of flowers formed and when they are formed, we think this pathway is at the forefront," Wagner said.

Farmers already use gibberellin-deficient breeds of rice to produce more compact plants that don't topple over in wind and rain. The new understanding of gibberellin's role gained from this study could help create plant breeds that are even more productive

"We think it can be used to enhance yield," Wagner said. "Seeds are the product of a flower so if you want more seed you want more flowers. Being able to modulate the accumulation or degradation of gibberellin could allow one to optimize or enhance the seed set and yield in crop plants."

The Penn team plans to explore other plants to see if gibberellin operates the same way across species and in perennials as well and to further explore how different levels of the hormone trigger regulatory events that either inhibit or promote flower production.

The National Science Foundation supported the research.

Ending the perfect storm: Protein key to beating flu pandemics

 

May 8, 2014

Walter and Eliza Hall Institute

A protein called SOCS4 has been shown to act as a handbrake on the immune system's runaway reaction to flu infection, providing a possible means of minimizing the impact of flu pandemics. Scientists have found that without SOCS4 the immune response to influenza infection is slowed and there is a vast increase in the number of damaging inflammatory molecules in the lungs. This flood of inflammatory molecules, known as a 'cytokine storm', is thought to contribute to flu-related deaths in humans.


Dr. Lukasz Kedzierski, Dr. Sandra Nicholson and colleagues have found the protein SOCS4 plays an important role in regulating the immune system's response to the flu.

A protein called SOCS4 has been shown to act as a handbrake on the immune system's runaway reaction to flu infection, providing a possible means of minimising the impact of flu pandemics.

Scientists from Melbourne's Walter and Eliza Hall Institute have found that without SOCS4 the immune response to influenza infection is slowed and there is a vast increase in the number of damaging inflammatory molecules in the lungs. This flood of inflammatory molecules, known as a 'cytokine storm', is thought to contribute to flu-related deaths in humans.

Dr Lukasz Kedzierski, Dr Sandra Nicholson and colleagues from the institute, in collaboration with Associate Professor Katherine Kedzierska and colleagues from The University of Melbourne, made the discovery, which was published today in the journal PLOS Pathogens.

Suppressors of cytokine signalling (SOCS) molecules control the flow of chemical messages inside cells and were discovered by institute researchers in the 1990s. Immune cells release signalling molecules called cytokines to trigger an immune response that protects the body from infection. If too many cytokines are released, SOCS proteins suppress the activity of the cytokines to prevent unwanted inflammation and tissue damage.

Dr Kedzierski said removing SOCS4 upset the normal immune response to influenza infection. "We showed that, following influenza infection, the immune system did not respond as quickly as expected, and initially sent key immune cells to the wrong location in the body," he said. "In addition, inflammatory cytokines began to accumulate in the lungs, leading to a cytokine storm that causes significant damage to the tissue."

A cytokine storm could result in increased severity of symptoms and, in many instances, to multiple organ failure and death, Dr Kedzierski said. "A cytokine storm is like an uncontrolled chain reaction, and the cytokines that normally stimulate the immune response continue to trigger other immune cells to produce more cytokines. Our research suggests that SOCS4 keeps this response under control, preventing a cytokine storm in the lungs that can lead to a build up of fluid that restricts breathing and can ultimately result in death."

Cytokine storms are believed to be the primary cause of death in young and otherwise healthy people who are infected with influenza, particularly pandemic flu strains.

"Many of the estimated 50 million deaths caused by the 1918 flu epidemic are believed to have been caused by these cytokine storms," Dr Kedzierski said. "Cytokine storms in patients' lungs are also thought to be responsible for many of the 500,000 influenza-related deaths that occur around the world each year."

Dr Nicholson, laboratory head in the institute's Inflammation division, said the role of SOCS4 in the body was previously unknown. "When other SOCS proteins are removed from laboratory models, their function and the effect of their loss becomes immediately apparent," she said. "However, the SOCS4-deficient model appeared to be completely normal. It was only when we looked at the response to infection that we found the immune system was significantly affected by the loss of SOCS4."

Dr Nicholson said drugs that enhanced or mimicked SOCS4 action could be a useful way of treating pandemic or more aggressive flu strains, as well as other infections.

"Knowing the target and function of SOCS4 may lead to us being able to control inflammation in severe cases of the flu or to the development of new, preventive therapies," she said. "Our research so far is very promising and we have some strong leads to pursue in finding out exactly how this molecule works."


Story Source:

The above story is based on materials provided by Walter and Eliza Hall Institute. Note: Materials may be edited for content and length.


Journal Reference:

  1. Lukasz Kedzierski, Edmond M. Linossi, Tatiana B. Kolesnik, E. Bridie Day, Nicola L. Bird, Benjamin T. Kile, Gabrielle T. Belz, Donald Metcalf, Nicos A. Nicola, Katherine Kedzierska, Sandra E. Nicholson. Suppressor of Cytokine Signaling 4 (SOCS4) Protects against Severe Cytokine Storm and Enhances Viral Clearance during Influenza Infection. PLoS Pathogens, 2014; 10 (5): e1004134 DOI: 10.1371/journal.ppat.1004134

Fueling aviation with hardwoods


Professor Bond is a team member and lead author of of a summary on the use of technology designed to transform lignocellulosic biomass into a jet fuel surrogate via catalytic chemistry.

A key challenge in the biofuels landscape is to get more advanced biofuels -- fuels other than corn ethanol and vegetable oil-based biodiesel -- into the transportation pool. Utilization of advanced biofuels is stipulated by the Energy Independence and Security Act; however, current production levels lag behind proposed targets. Additionally, certain transportation sectors, such as aviation, are likely to continue to require liquid hydrocarbon fuels in the long term even as light duty transportation shifts to alternative power sources.

A multi-university team lead by George Huber, Professor of Chemical and Biological Engineering at the University of Wisconsin-Madison, has addressed both challenges through the concerted development of technology designed to transform lignocellulosic biomass into a jet fuel surrogate via catalytic chemistry. This promising approach highlights the versatility of lignocellulose as a feedstock and was recently summarized in the journal Energy & Environmental Science by team member and lead author Jesse Q. Bond, Syracuse University Assistant Professor of Biomedical and Chemical Engineering.

Lignocellulosic biomass is an abundant natural resource that includes inedible portions of food crops as well as grasses, trees, and other "woody" biomass. According to the United States Department of Energy, the United States could sustainably produce as much as 1.6 billion tons of lignocellulose per year as an industrial feedstock. Lignocellulose can be processed to yield various transportation fuels and commodity chemicals; however, current strategies are not generally cost-competitive with petroleum. Here, Huber's team presents a comprehensive approach toward streamlining biomass processing for the production of aviation fuels. The proposed technology hinges on efficient production of furfural and levulinic acid from sugars that are commonly present in lignocellulosic biomass. These two compounds are then transformed into a mixture of chemicals that are indistinguishable from the primary components of petroleum-derived aviation fuels.

The technology was demonstrated through a multi-university partnership that brought together expertise in biomass processing, catalyst design, reaction engineering, and process modelling. Economic analysis suggests that, based on the current state of the technology, jet fuel-range hydrocarbons could be produced at a minimum selling price of $4.75 per gallon. The work also identifies primary cost drivers and suggests that increasing efficiency in wastewater treatment and decreasing catalyst costs could reduce that amount to $2.88 per gallon.

"This effort exemplifies the impact of a well-designed collaboration," said Bond. "As individual researchers, we sometimes focus too narrowly on problems that we can resolve using our own existing skills. Biomass refining is complex, and bio-based aviation fuels are difficult targets. Many of the real roadblocks occur at scarcely-studied research intersections. In our view, the only meaningful way to tackle these challenges is through strategic partnerships, and that is precisely what we've done in this program."


Story Source:

The above story is based on materials provided by Syracuse University. Note: Materials may be edited for content and length.


Journal Reference:

  1. Jesse Q. Bond, Aniruddha A. Upadhye, Hakan Olcay, Geoffrey A. Tompsett, Jungho Jae, Rong Xing, David Martin Alonso, Dong Wang, Taiying Zhang, Rajeev Kumar, Andrew Foster, S. Murat Sen, Christos T. Maravelias, Robert Malina, Steven R. H. Barrett, Raul Lobo, Charles E. Wyman, James A. Dumesic, George W. Huber. Production of renewable jet fuel range alkanes and commodity chemicals from integrated catalytic processing of biomass. Energy & Environmental Science, 2014; 7 (4): 1500 DOI: 10.1039/C3EE43846E

Super-charged tropical trees: Borneo’s productive trees vitally important for global carbon cycling


This image shows measuring the diameter of a large tree in a dipterocarp forest (Gunung Mulu, Sarawak). The buttress root helps support its great weight.

A team of scientists has found that the woody growth of forests in north Borneo is half as great again as in the most productive forests of north-west Amazonia, an average difference of 3.2 tons of wood per hectare per year.

The new study, published today in the Journal of Ecology, examined differences in above-ground wood production (one component of the total uptake of carbon by plants) which is critically important in the global cycling of carbon.

Trees are taller for a given diameter in Southeast Asia compared with South America, meaning they gain more biomass per unit of diameter growth, and this in part explains the differences observed.

The research team also discovered that trees in north Borneo belonging to the family Dipterocarpaceae (or dipterocarps, translating literally to "winged seeds"), which grow to giant sizes, produced wood faster than neighbouring trees of other families, or any trees in the Amazonian sites.

Whilst regional variation in wood production rates has been suspected, this research, carried out by an international collaboration of scientists from the UK, Asia, South America and USA, is the first to use identical methods in Amazonia and Borneo to measure properties of both the forests and their soils, making robust comparisons among different continents possible for the first time.

The two regions were compared as they are climatically similar with no annual dry season, and each region has a range of soil conditions, meaning the primary difference between them is the different tree species that happen to exist in each region.

Above-ground wood production is the amount of biomass gained in the woody parts of a tree. It can be estimated from repeated measures of tree diameter and estimates of wood density and tree height. The study examined data from 26 hectares of forest and 12,000 trees which have been monitored for more than twenty years.

Lead author Dr Lindsay Banin from the UK's Centre for Ecology & Hydrology said, "In Borneo, dipterocarps -- a family of large trees with winged seeds -- produce wood more quickly than their neighbours. This means that they have evolved something special and unique -- what exactly this is remains a mystery. Dipterocarps are known to make special relationships with fungi in the soil, so they may be able to tap into scarce nutrient resources. Or, they may be trading-off growth of other plant parts."

Co-author Professor Oliver Phillips from the University of Leeds said, "One big question in ecology is whether plant species composition matters at all to fundamental ecosystem functions such as productivity, or carbon storage. The fact that dipterocarp-dominated forests achieve faster wood growth than even the most diverse forests in the Amazon shows that the random evolutionary histories of continents can determine their whole ecology. Identity really does matter."

With growing global datasets collected using standardised methods, further comparisons will be possible across the tropics to help elucidate the nature and causes of variation in plant biomass growth. Understanding variation in the capacity for forests to store and sequester carbon is vitally important for managing them best to keep carbon out of the atmosphere.


Story Source:

The above story is based on materials provided by Centre for Ecology and Hydrology. Note: Materials may be edited for content and length.


Journal Reference:

  1. Lindsay Banin, Simon L. Lewis, Gabriela Lopez-Gonzalez, Timothy R. Baker, Carlos A. Quesada, Kuo-Jung Chao, David F.R.P. Burslem, Reuben Nilus, Kamariah Abu Salim, Helen C. Keeling, Sylvester Tan, Stuart J. Davies, Abel Monteagudo, Rodolfo Vásquez, Jon Lloyd, David Neill, Nigel Pitman, Oliver L. Phillips. Tropical forest wood production: a cross-continental comparison. Journal of Ecology, 2014; DOI: 10.1111/1365-2745.12263

Get Educated!: List Of Free Courses And Lectures In The Sciences

 

Now I know many of you have come to the vine to learn, and if any of you are interested in getting into computer science, systems engineering, web design, programming, biology, chemistry and among others.., I have found and decided to put a list together of the various free courses and lectures you can take and listen to in order to get yourself started in higher learning. I found these various links on numerous websites, and A good number of these come directly from professors, or colleges such as MIT, Stanford, ITT, Berkley, and Harvard to which I selected from the various sites I visited. It's important to note that many of the sites I visited also listed a lot of junk science and fake courses to which I found rather annoying giving they were listed along side legitimate courses and lectures. That aside, I took the time to select legitimate videos, lectures, and courses among the mass of crap not to just simply share these with you, but large in part because science education here in America is in dire need of help. I took the time to edit and format these links for Newsvine, and so for those of you who might be interested in learning or seeking a Career in various fields of science, I believe these courses and lectures will help point you in the right direction and even give you a head start. This list will of course grow, and I hope to bring more physics and evolutionary science courses as well. So enjoy and expand your mind!

Computer science and programming:

Astrology, Astrophysics, and Astrobiology :

Biology, Genetics, and Evolution:

Chemistry: